BIGSI requires that you have Berkeley-DB version 4.8.30 installed. We also recommend installing mccortex to assist with the preprocessing of the data.

1. Requirements

To install Berkeley-DB with brew:
brew install berkeley-db4

pip3 install cython
BERKELEYDB_DIR=/usr/local/opt/berkeley-db4/ pip3 install bsddb3

To install python rockdb backend follow instructions at https://github.com/twmht/python-rocksdb

2. Install

git clone https://github.com/Phelimb/BIGSI.git
pip3 install -r requirements.txt
pip3 install -r optional-requirements.txt
pip install .