Mac

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Requirements

BIGSI requires that you have Berkeley-DB version 4.8.30 installed. We also recommend installing mccortex to assist with the preprocessing of the data.

1. Requirements

To install Berkeley-DB with brew:
brew install berkeley-db4

pip3 install cython
BERKELEYDB_DIR=/usr/local/opt/berkeley-db4/ pip3 install bsddb3

2. Install

git clone https://github.com/Phelimb/BIGSI.git
cd BIGSI
pip3 install -r requirements.txt
python3 setup.py install